SWAT-web Sample Results

Sliding Window Association Test for Alzheimer's Disease

Sample Result Preview - Analysis of APOE LD Block region (Window size: 200, Imputation: 5-NN).

Accuracy per Window

Accuracy per window

Feature Importances

Feature importances

Top Accuracy Results

Rank Index Accuracy
1 2001 0.685
2 2201 0.685
3 401 0.62
4 3801 0.62
5 3601 0.615
6 601 0.605
7 4601 0.6
8 4001 0.595
9 4801 0.595
10 801 0.59
11 1601 0.59
12 1801 0.59
13 4401 0.59
14 5001 0.58
15 4201 0.575
16 1001 0.57
17 3001 0.57
18 2801 0.565
19 3201 0.565
20 1201 0.555

Top SNPs

Rank Rs Number Importance Position Alleles Gene
1 rs429358 0.0137 19:44908683 T/C APOE
2 rs4420638 0.0122 19:44919688 A/G APOC1
3 rs769449 0.0113 19:44906744 G/A APOE
4 rs10414043 0.0106 19:44912455 G/A APOC1
5 rs5117 0.0093 19:44915532 T/C APOC1
6 rs438811 0.0091 19:44913483 C/T APOC1
7 rs56131196 0.0083 19:44919588 G/A APOC1
8 rs483082 0.0066 19:44912920 G/T APOC1
9 rs34954997 0.0065 Unknown Unknown Unknown
10 rs6857 0.0064 19:44888996 C/T NECTIN2
11 rs142042446 0.0060 19:44883210 TAA/TAATAA NECTIN2
12 rs157582 0.0056 19:44892961 C/T TOMM40
13 rs75627662 0.0049 19:44910318 C/T
14 rs12972970 0.0048 19:44884338 G/A NECTIN2
15 rs59007384 0.0046 19:44893407 G/A, G/T TOMM40
16 rs184017 0.0046 19:44891711 T/G TOMM40
17 rs2075650 0.0040 19:44892361 A/G TOMM40
18 rs66626994 0.0039 19:44924976 G/A APOC1P1
19 rs71352238 0.0033 19:44891078 T/C TOMM40
20 rs34404554 0.0033 19:44892651 C/G TOMM40